PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_013594303.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB
Protein Properties Length: 288aa    MW: 32495.5 Da    PI: 5.6925
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_013594303.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.12e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l+d+++++G+g+W+  ++  g+ R++k+c++rw +yl
   XP_013594303.1 14 KGPWTPEEDQKLIDYIRLHGPGNWRILPKNAGLQRCGKSCRLRWTNYL 61
                     79********************************************97 PP

2Myb_DNA-binding54.33.1e-1767111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rgr++ eE+e +++++  +G++ W++Ia++++ gRt++++k++w+++
   XP_013594303.1  67 RGRFSFEEEETIIQLHSVMGNK-WSAIAARLP-GRTDNEIKNHWNTH 111
                      89********************.*********.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-26564IPR009057Homeodomain-like
PROSITE profilePS5129426.834965IPR017930Myb domain
SuperFamilySSF466891.91E-3111108IPR009057Homeodomain-like
SMARTSM007176.4E-151363IPR001005SANT/Myb domain
PfamPF002497.0E-171461IPR001005SANT/Myb domain
CDDcd001673.15E-131661No hitNo description
Gene3DG3DSA:1.10.10.607.4E-2765117IPR009057Homeodomain-like
PROSITE profilePS5129421.00966116IPR017930Myb domain
SMARTSM007172.7E-1666114IPR001005SANT/Myb domain
PfamPF002491.7E-1567111IPR001005SANT/Myb domain
CDDcd001672.05E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0010200Biological Processresponse to chitin
GO:0016049Biological Processcell growth
GO:0042335Biological Processcuticle development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0080091Biological Processregulation of raffinose metabolic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MGRLPCCDKN GVKKGPWTPE EDQKLIDYIR LHGPGNWRIL PKNAGLQRCG KSCRLRWTNY  60
LRPDIKRGRF SFEEEETIIQ LHSVMGNKWS AIAARLPGRT DNEIKNHWNT HIRKRLVRSG  120
IDPVTHSPRL DLLDLSSLLA AIFNQPNFSS VATNASSLLN PDVLRLASLL LPPQQPLQNP  180
NTLYESNLDQ NLQTPNTSVS SQDTQPQAEC TAPTKDETSY FEPMNARLEV GPSDVLPPLS  240
ESFDLDSLMS TPNYSPQQNN IEAEANSSSL FDFRFPDNFT FDDFMGLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-31141167108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00457DAPTransfer from AT4G28110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR0765480.0KR076548.1 Brassica napus MYB transcription factor 41 (MYB41.1) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013594303.10.0PREDICTED: transcription factor MYB39-like
SwissprotQ8GWP03e-71MYB39_ARATH; Transcription factor MYB39
TrEMBLA0A0D3A7720.0A0A0D3A772_BRAOL; Uncharacterized protein
STRINGBra026281.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28110.11e-152myb domain protein 41